Top of Page

Are You Using the Right Data Science Tools for Your Big Data Projects?

Data scientists rely on tools/products/solutions to help them get insights from data. Gregory Piatetsky of KDNuggets conducts an annual survey of data professionals to better understand the different types of tools they use. Here are the results of the 2015 survey. He followed his initial posting with additional analyses to better understand which tools go together. In the latter posting, he looked at pairs of tools and found that some tools tend to go together (usage of tools are correlated with each other). He offered the anonymized raw data set for free to encourage other people to analyze the data, which I did.

Dimension Reduction through Principal Components Analysis

His approach looked at pairs of tools to understand their relationship with the other. I took a slightly different approach. I applied principal components analysis. The current approach groups the tools by looking at the relationship among all tools simultaneously. In general, principal components analysis examines the statistical relationships (e.g., covariances) among a large set of variables and tries to explain these correlations using a smaller number of variables (components).

The results of the principal components analysis are presented in tabular format called the principal component matrix. This matrix is an NxM table (N = number of original variables and M = number of underlying components). The elements of a principal component matrix represent the relationship between each of the variables and the components. These elements represent the strength of relationship between the variables and each of the underlying components. The results of the principal components analysis tell us two things:

  1. number of underlying components that describe the initial set of variables
  2. which variables are best represented by each component


This use of principal components analysis is exploratory in nature. That is, I didn't impose a pre-defined structure on the data itself. The pattern of relationships among the 95 tools drove the pattern of results. While human judgment comes into play in the determination of the number of components that best describe the data, the selection of the number of components is based on the results. The goal of the current analysis was to explain the relationship among the 95 tools with as few components as was necessary. Toward that end, there are a couple of rules of thumb that I used to determine the number of components using the eigenvalues (output of principal components analysis). The first rule of thumb is to set the number of components based on the number of eigenvalues greater than unity (1.0). Another way is to plot (called a scree plot) the 95 eigenvalues to identify a clear breaking point along the eigenvalues.

The plot of the eigenvalues appeared to break around the 13th and 14th eigenvalue. Therefore, I chose a 13-factor solution to explain the relationships among the 95 data science tools.

Table 1. Principal Component Matrix of 95 Data Science Tools - data from KDNuggets 2015 annual survey of data professionals. Click image to enlarge.

Based on a 13-factor solution, the principal component matrix (see Table 1) was somewhat easy to interpret. Some of the cell values in the matrix in Table 1 are bold to represent values greater than .33. The components' headings are based on the tools that loaded highest on that component. For example, four IBM products loaded highly on component 6, showing that usage of these tools by a given respondent tend to go together (if you use one of IBM's tools, you tend to use the other(s)); as a result, I labeled that component as IBM. Similarly, based on the tools that were highly related to the other 12 factors, the other 12 factors were labeled accordingly.

Tool Groupings

The results suggest that 13 tool grouping describe the data. I've listed the groupings below and include the tools that describe each grouping (if number of votes are greater than 20). Tools that fall within a specific group tend to be used together.

  1. Hadoop, HBase, Hive, Mahout, MLlib, Other Hadoop/HDFS-based tools, Pig, Scala, Spark, SQL on Hadoop tools
  2. Microsoft Azure ML, Microsoft Power BI, Microsoft SQL Server, Revolution Analytics
  3. Dataiku, H2O (0xdata), Python, scikit-learn, Theano, Vowpal Wabbit
  4. JMP, SAS Base, SAS Enterprise Miner
  5. Gnu Octave, MATLAB, Orange, R, RapidMiner, Rattle, Weka
  6. IBM Cognos, IBM SPSS Modeler, IBM SPSS Statistics, IBM Watson Analytics
  7. Actian, C/C++, Perl, SQLang, Unix shell/awk/gawk
  8. Caffe and Pylearn2
  9. Pentaho and QlikView
  10. Ayasdi, Datameer and Zementis
  11. XLSTAT for Excel
  12. Other Deep Learning tools, Other free analytics/data mining tools, Other Hadoop/HDF-based tools, Other paid analytics/data mining/data science software, Other programming languages
  13. C4.5/C5.0/See5, Miner3D, Oracle Data Miner


The use of specific Big Data, data mining and data science tools tend to occur together.  Based on the current analysis of tool usage, the 90+ tools can be grouped into a smaller subsets of tools. The results of the current analysis are somewhat consistent with the prior results. For example, Piatetsky found that Pig usage was closely associate with Hadoop, Spark, scikit-learn, Unix shell/awk/gawk and Python. In the current analysis, we found that Pig was also associated with Hadoop and Spark. However, we found that the use of Pig was associated with HBase, Hive, Mahout, MLlib, Scala and SQL on Hadoop. It's important to note that the former analysis used the top 20 tools while the latter analysis used all 90+ tools; this difference could explain the differences between the two analyses.

To improve your chances of success in your Big Data projects, it's important that you select the right data tools. No single tool will do it all, and data professionals tend to use more than one data-related tool (in this study, we found that, on average, data professionals use 5 data tools). One way to help in your selection process is to identify the tools sets that other data professionals are using. The results suggest that you might want to consider tools within components as potential candidates to include in your arsenal.

Some of the tool groupings are simply based on the parent company of the tools, including IBM, Microsoft and SAS. Perhaps cross-selling data science tools is a lot easier within a major brand than it is across different brands. This makes sense to the extent that a company's products likely work together better than with other vendors' products. Still, more research is definitely needed to understand why certain tools tend to be used together.

I'm interested in seeing what others find with these data. Here is the link to the anonymized data set (CSV format).

This article originally appeared on CustomerThink.



  1. Are You Using the Right Data Science Tools for ... - May 19, 2016

    […] The use of specific Big Data, data mining and data science tools tend to occur together; the 90+ tools can be grouped into a smaller subsets of tools.  […]

Leave a Reply | 206.372.5990